Working with Sequencing Data

Analysis with ElemBio Cloud has many advantages, but you might feel out of your element operating new software. Tutorials offer additional guidance for using Element Biosciences software so that you can unlock your analysis potential.

Select a tutorial to walk through a scenario and improve your product knowledge. For complete product documentation, see the section of the website for the specific software.

Getting Started with Bases2Fastq

Bases2Fastq processes Element AVITI™ System sequencing data and converts base calls into FASTQ files. While ElemBio Cloud offers a Bases2Fastq verified flow that executes in cloud environments, Element makes Bases2Fastq available as an executable through a Docker container or a static binary. This tutorial uses simulated data to demonstrate how to manually set up and execute Bases2Fastq in a Linux or Windows environment.

Integrating DNAnexus for FASTQ Automation

Working together, DNAnexus and ElemBio Cloud provide an end-to-end solution for AVITI data analysis. Using a DNAnexus provider and storage connection in ElemBio Cloud, the AVITI System streams data directly to a DNAnexus project. With the configuration of a Bases2Fastq flow in ElemBio Cloud and a workflow in DNAnexus, you can automatically generate FASTQ files and initiate secondary analysis. This tutorial demonstrates how to integrate the ElemBio Cloud and DNAnexus platforms to set up automatic downstream analyses of run data.

_{Element does not provide support for community-developed tools and makes no guarantees regarding their function or performance. Please contact tool developers with any questions.}