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Element Biosciences Software Documentation

Get the answers you need for sequencing and multiomic data analysis

Run Planning and Monitoring
ElemBio Cloud offers a complete platform for custom design, run planning and monitoring, and integration management.
Data Analysis for Sequencing
You've got your run data, but what's next? Explore resources for analyzing sequencing runs.
Data Analysis for Cytos™ Cell Screening
For most assays, analysis data is available as soon as your run finishes. 3' Transcriptome and MPS runs require a secondary analysis step.

Complete Solution with ElemBio Catalyst™

ElemBio Catalyst is a native cloud storage and compute add-on within ElemBio Cloud that Element manages on your behalf.

Multiomics Visualization with CytoCanvas Studio™

Explore transcriptomics, proteomics, and cell phenotypes for a variety of experimental conditions.

Explore Tutorials

Getting Started with Bases2Fastq

Run Bases2Fastq to convert sequencing base calls from Element systems into FASTQ files.

Getting Started with Cells2Stats for Cell Screening

Run Cells2Stats to generate cell screening statistics from AVITI24 data.

Evaluating and Applying Alternate Segmentation Models

Evaluate and apply alternate Cellpose segmentation models to refine cell boundaries on AVITI24 cell screening data.

Analyzing an Optical Pooled CRISPR Screen

Compare knockout and control cells across RNA, morphology, and protein readouts from one pooled screen.