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Introduction

Learn what the informatics tools do and which one to open after a run.

Informatics tooling covers the tools you use after a run to produce files for secondary analysis, visualization, and further computation.

Choose a tool​

How sequencing tools launch​

The path depends on your infrastructure - ElemBio Catalyst™, a cloud provider like AWS or Seqera, or your own compute environment.

Diagram showing sequencing tool launch paths: Bases2Fastq launches automatically on ElemBio Catalyst, on flow trigger with AWS or Seqera, or manually in your own environment. Sentieon or Parabricks can optionally follow.

How cell screening tools launch​

The path depends on your infrastructure — ElemBio Catalyst or AWS and your own environment — and whether your run type requires a secondary analysis step.

Diagram showing cell screening tool launch paths: onboard analysis runs automatically, Cytos Cell Screening flow launches automatically on ElemBio Catalyst for 3' Transcriptome and MPS runs, Multiomics Workflow runs manually on AWS or your own environment, and optionally the ElemBio Cloud Sandbox or Multiomics Python package for further analysis.
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