Cytoprofiling Run Field Descriptions
ElemBio™ Cloud displays the following information for planned, active, and historical cytoprofiling runs:
| Field | Description |
|---|---|
Assigned | Percent of all reads that are assigned to a target |
B1-B8 | Batches in the cytoprofiling run, in numerical order |
Cartridge | Cartridge type of a cytoprofiling run |
Cell Confluency | Percent of flow cell surface area that is covered by cells |
Cell Count | Number of cells that are identified in cell segmentation |
Connection ID | Unique identifier that the instrument assigns to the storage connection to transfer data from the instrument |
Created By | Name of the team member that created the planned run |
Expanded Z | If Yes and used for the run, this setting increases the depth of imaging in the z-dimension for cells with increased height or a tendency to form dense colonies. |
Expires On | Expiration date for a consumable, written as yyyy-mm-dd |
Instrument Serial Number | Instrument serial number that the run was performed on |
Instrument:Side | Instrument name and side, either Side A or Side B |
Lot Number | Manufacturing batch identifier that Element assigns to a consumable |
No. Batches | Number of batches in the run |
No. Wells | Number of wells in the flow cell consumable |
Operator | Name of the person that set up the run on the instrument |
Output Location | The output location of the run output data. If the run data was sent to a cloud location, the data output will be a URL path. If the data was moved to another location, the link might not work. |
Panels | (For Teton™ and Teton Atlas™ runs) Fixed panels and optional custom add-on protein of a cytoprofiling run |
Part Number | The item identifier that Element Biosciences™ assigns to the consumable |
Run Description | Optional description of the run |
Run ID | Unique identifier that AVITI™ OS assigns to the run |
Run Length | Run duration in hours and minutes |
Run Name | Name of the cytoprofiling run |
Serial Number | Unique identifier for the consumable |
Small Cell | If Yes and used for the run, this setting increases the density of target counts per cell and prevent oversaturation of polonies. |
Software Version | AVITI OS version that is operating the instrument during the run |
Status | Current run status. For planned runs, In Use or no status. For active or historical runs, see Run Statuses. |
Step | Current run step, which appears as {Status} at {Batch} for stopped, failed, or active runs, and "Completed" for completed runs |
Tags | Any tags that are assigned to the run |
Time Completed | Run completion timestamp, written as yyyy-mm-dd hh:mm |
Time Created | Run creation timestamp, written as yyyy-mm-dd hh:mm |
Time Last Updated | Last run update timestamp, written as yyyy-mm-dd hh:mm |
Time Started | Run start timestamp, written as yyyy-mm-dd hh:mm |
Updated By | Name of the team member that is responsible for the last update of the planned run |
Well Layout | Well layout of a cytoprofiling run |
Workflow | Name of the Direct In Sample Sequencing (DISS) workflow that is used for the cytoprofiling run |