Target Site Settings
Target settings are defined per-target site and are used for target-to-cell assignment in Direct In-Sample Sequencing (DISS) cytoprofiling runs. They are applied during cell assignment in Cells2Stats or FASTQ generation in Bases2Fastq when at least one target has completed cell assignment.
Columns
The Target Settings section includes the TargetSiteName, SettingName, and Value columns. When the Target Settings section is populated, all columns are required. When the TargetSiteName section is unpopulated, then the default settings are applied to targets.
| Column | Constraints | Definition | Allowed Values |
|---|---|---|---|
TargetSiteName | Required | The name of the target site that is sequenced in the cytoprofiling run and is present in the associated Teton Atlas custom design | 1-64 case-sensitive alphanumeric characters, hyphens (-), and underscores (_) |
SettingName | Required | The name of the setting | Allowed Settings |
Value | Required | The value that is applied to the setting | Setting specific |
Settings
| Setting | Value | Default |
|---|---|---|
TargetMask | A base mask that defines which cycles contain the cell assignment target sequence | The target mask from the panel.json file that is supplied when a Teton Atlas Custom Workflow is created |
FastqMask | A base mask that defines which cycles to include in the per-target FASTQ file. | Same as TargetMask |