Seqera

ElemBio Cloud integrates with Seqera as an analysis development platform. The Seqera provider in ElemBio Cloud supports compute activities that can execute compatible verified flows from ElemBio Cloud, such as the Bases2Fastq Flow. Because Seqera can only serve as a provider for flows, you must configure a separate AWS or GCS provider for a storage connection.

Requirements

Configuration of a Seqera provider with a verified flow requires the following components:

• An organization on Seqera
• A workspace for the organization
• A compute environment within the workspace
• An access token for a user associated with your organization

For more information on the requirements, see the Workspace Management and Seqera Platform API pages of the Seqera Docs.

Configuring ElemBio Cloud

After fulfilling the provider requirements, you can complete the following tasks to configure ElemBio Cloud. The available actions depend on your user permissions.

Add a Seqera Provider

1. Review the requirements for a Seqera provider.
2. On the Providers page, select Seqera.
3. Enter a unique name.
4. Enter the Workspace ID of the workspace for executions.
5. Enter your Organization ID.
6. Enter the access token generated in Seqera for the user associated with your organization.
7. Select Save.

Add a Seqera Compute Connection

1. On the Compute Connections page, select Add Compute.
2. Select the Seqera provider for the compute connection.
3. Enter a unique name.
4. Select or enter the compute environment ID where the workflow executes.
5. Select Save.

Add a Seqera Bases2Fastq Flow

To create a Seqera Bases2Fastq flow, follow the Add Assignment Flow instructions.