PhiX Control libraries, Elevate libraries, and LoopSeq for AVITI libraries include Element index sequences, which are listed in the subsequent pages.
PhiX Control Library Index Sequences
When entering the PhiX Control Library index sequences in the run manifest, Element recommends using a consistent sample name that identifies the sequences as the PhiX Control.
PhiX Control Library, Adept
| Sample Name | Index 1 Sequence | Index 2 Sequence |
|---|
| PhiX_Adept | ATGTCGCTAG | CTAGCTCGTA |
| PhiX_Adept | CACAGATCGT | ACGAGAGTCT |
| PhiX_Adept | GCACATAGTC | GACTACTAGC |
| PhiX_Adept | TGTGTCGACA | TGTCTGACAG |
Cloudbreak PhiX Control Library, Elevate
| Sample Name | Index 1 Sequence | Index 2 Sequence |
|---|
| PhiX_Elevate | ACGTGTAGC | GCTAGTGCA |
| PhiX_Elevate | CACATGCTG | AGACACTGT |
| PhiX_Elevate | GTACACGAT | CTCGTACAG |
| PhiX_Elevate | TGTGCATCA | TAGTCGATC |
Cloudbreak Freestyle PhiX Control, Third Party
| Sample Name | Index 1 Sequence | Index 2 Sequence |
|---|
| PhiX_Third | ATGTCGCTAG | CTAGCTCGTA |
| PhiX_Third | CACAGATCGT | ACGAGAGTCT |
| PhiX_Third | GCACATAGTC | GACTACTAGC |
| PhiX_Third | TGTGTCGACA | TGTCTGACAG |
Elevate Cloudbreak Index Sequences
The Elevate Cloudbreak Index Sequences are used for both Cloudbreak and Cloudbreak Freestyle chemistry.
| Well | Index Pair Name | Index 1 | Index 2 |
|---|
| A01 | ELP_UA_001 | TGTAGGCCA | TCTAGCCTC |
| B01 | ELP_UA_002 | ATTGCCATA | ATATTGGTG |
| C01 | ELP_UA_003 | TACATATCG | TCCAATACC |
| D01 | ELP_UA_004 | TATCAACGC | GATTCACGG |
| E01 | ELP_UA_005 | GCTATTACT | CGTTGAATT |
| F01 | ELP_UA_006 | TCCACTAGC | ACGGCCAAC |
| G01 | ELP_UA_007 | TGTCTGTAA | AAGAGCGCC |
| H01 | ELP_UA_008 | CTATTAGAC | CAATTGTGA |
| A02 | ELP_UA_009 | CTCGTTAGT | TATGTGGCC |
| B02 | ELP_UA_010 | AATTCGTCT | ATTGTAACC |
| C02 | ELP_UA_011 | CTTAATCGA | TTCTATTGG |
| D02 | ELP_UA_012 | TTCCTTGGC | TAGGCCGTC |
| E02 | ELP_UA_013 | ACAACCGAT | TCAACTTAG |
| F02 | ELP_UA_014 | GGTCACTTG | AGGCGACCT |
| G02 | ELP_UA_015 | CAGAGCTCC | CCACGAACG |
| H02 | ELP_UA_016 | CCATCTTGC | CCGACCACT |
| A03 | ELP_UA_017 | ATTCTAGAG | AATCATGCG |
| B03 | ELP_UA_018 | GTGCGGTTC | TCTTGTGAT |
| C03 | ELP_UA_019 | TACCGTTGA | ATTGCGTAT |
| D03 | ELP_UA_020 | TCTTCGCAA | TACATCAGA |
| E03 | ELP_UA_021 | GATAGATGT | AAGGTGATT |
| F03 | ELP_UA_022 | TTGGCCAAC | TTGTTGTTC |
| G03 | ELP_UA_023 | CACGCACAT | CCAGGAGTC |
| H03 | ELP_UA_024 | CTCCGCTAT | TCATGCTTG |
| A04 | ELP_UA_025 | ACAATCAGC | CTACATGAA |
| B04 | ELP_UA_026 | TGGAATGCT | GAACAACGA |
| C04 | ELP_UA_027 | ACAGGTCGC | CTCTGTCCA |
| D04 | ELP_UA_028 | GAGAGCAGA | TACGTACTC |
| E04 | ELP_UA_029 | GTTATGCTG | TCGCATAGT |
| F04 | ELP_UA_030 | TAAGTACTG | AAGATAGAG |
| G04 | ELP_UA_031 | TGCCAGCAT | CGGTCCTAA |
| H04 | ELP_UA_032 | ACAGTGTAA | TCCTCGCAA |
| A05 | ELP_UA_033 | TCAACGTCT | CAGTAGGTA |
| B05 | ELP_UA_034 | CTGTCATGA | CTTATCGCG |
| C05 | ELP_UA_035 | TATGTCTCT | GGCAACGCA |
| D05 | ELP_UA_036 | ATTGATACC | CTCGAAGAT |
| E05 | ELP_UA_037 | GGTGGTCTA | GAGTTCGCT |
| F05 | ELP_UA_038 | ACTAGCTCA | TGGTATGCC |
| G05 | ELP_UA_039 | GGATGCAAT | GGACAGCTC |
| H05 | ELP_UA_040 | TGTGGCAGT | AGGCGTAAG |
| A06 | ELP_UA_041 | CTATACCTC | GGTGCTCCT |
| B06 | ELP_UA_042 | TCCATCGTT | CCATATTCT |
| C06 | ELP_UA_043 | GTGGTTATC | GTGTTAGGA |
| D06 | ELP_UA_044 | GACTTAACC | GATCGCGAA |
| E06 | ELP_UA_045 | CATTCCAGC | CAAGCAACT |
| F06 | ELP_UA_046 | TGGATCACA | ACCGTTCGT |
| G06 | ELP_UA_047 | GGATCTCCG | GGCCTTCAA |
| H06 | ELP_UA_048 | TGGCGTGAG | TTCAGGTCT |
| A07 | ELP_UA_049 | GTCCACGGA | GGTCCGAGA |
| B07 | ELP_UA_050 | GTACTTCAA | CAAGTGCAG |
| C07 | ELP_UA_051 | TCACTCAAG | GACTGATTA |
| D07 | ELP_UA_052 | ATCCTCATC | AGATCTCTA |
| E07 | ELP_UA_053 | GGTTGGATG | GTTCTGTAA |
| F07 | ELP_UA_054 | GCCTCATAG | CACCAGTGT |
| G07 | ELP_UA_055 | TCCGCACTC | CGACCTTGA |
| H07 | ELP_UA_056 | AAGATTGGA | ATCCGCGTC |
| A08 | ELP_UA_057 | GGTCTGAGC | ATTGACCTG |
| B08 | ELP_UA_058 | CCGCTGCTA | AACTAACAC |
| C08 | ELP_UA_059 | GAGCATCTA | GTTACCAAC |
| D08 | ELP_UA_060 | AACAACAAG | TTATGGAGA |
| E08 | ELP_UA_061 | ATGCGTCCT | TTACACTCA |
| F08 | ELP_UA_062 | CCACACCAT | CACTGACGT |
| G08 | ELP_UA_063 | ACCTATTCT | CACCAACCG |
| H08 | ELP_UA_064 | ATATTCGGT | GACACTTAT |
| A09 | ELP_UA_065 | TGAGATGGA | TGGAGTATA |
| B09 | ELP_UA_066 | ACACAATCC | GTACCAGAG |
| C09 | ELP_UA_067 | TTCCGAACG | GCTGAATGT |
| D09 | ELP_UA_068 | ATCACACTA | TGTAAGCGG |
| E09 | ELP_UA_069 | CCAAGACCG | TGAACGGAT |
| F09 | ELP_UA_070 | CCTCATGTC | AGAGGAAGG |
| G09 | ELP_UA_071 | CCAGAGATG | TTGGCTGGA |
| H09 | ELP_UA_072 | CAGGAGTGC | CCAACACGA |
| A10 | ELP_UA_073 | ACGTAGAGT | CGAATGACA |
| B10 | ELP_UA_074 | AACGAAGTC | ACGAAGGCT |
| C10 | ELP_UA_075 | TGCGGATAC | ACCACAATT |
| D10 | ELP_UA_076 | GTAGGAGCC | CCACTCATT |
| E10 | ELP_UA_077 | CCGATATAT | CAGCACAAG |
| F10 | ELP_UA_078 | AGGAAGCCG | GCTATTATG |
| G10 | ELP_UA_079 | CCTGGAGAA | TGAGAACAA |
| H10 | ELP_UA_080 | CGTGCAACG | CCGGTATCG |
| A11 | ELP_UA_081 | CACCGACTC | TCCACCTGT |
| B11 | ELP_UA_082 | CAAGGCGTT | CTTCGACAC |
| C11 | ELP_UA_083 | GCGGCCTTA | GTGTCTCAC |
| D11 | ELP_UA_084 | CCGCGAACA | CCAATGTTG |
| E11 | ELP_UA_085 | CAACCGCAG | ACAGCCGTT |
| F11 | ELP_UA_086 | AGGTCCGTG | CGTGATAGC |
| G11 | ELP_UA_087 | CGAATCTGG | CGCACTGTG |
| H11 | ELP_UA_088 | GCGGATGAT | ATAACTACC |
| A12 | ELP_UA_089 | TAGTGACCA | ATTCGTTGA |
| B12 | ELP_UA_090 | AAGCCGGAC | AATACCGGT |
| C12 | ELP_UA_091 | ACGGCACGA | AGCACCTAG |
| D12 | ELP_UA_092 | GCTCAATAA | CAGTTGACC |
| E12 | ELP_UA_093 | GCATAGGCA | CAGCGTTCC |
| F12 | ELP_UA_094 | CACCAATGG | CGCGAGACT |
| G12 | ELP_UA_095 | CGCACCGAA | GAAGATGTT |
| H12 | ELP_UA_096 | AGCGTTCAG | TCTCTCTGC |
LoopSeq for AVITI Index Sequences
The following table shows LoopSeq for AVITI index sequences for Cloudbreak and Cloudbreak Freestyle sequencing chemistries.
| Index Primer | Index 1 | Index 2 |
|---|
| Index Primer P1 for AVITI | CTCGTTAGT | TATGTGGCC |
| Index Primer P2 for AVITI | ATTCTAGAG | AATCATGCG |
| Index Primer P3 for AVITI | ACAATCAGC | CTACATGAA |
| Index Primer P4 for AVITI | TCAACGTCT | CAGTAGGTA |