Workflow library

Browse the verified analysis workflows available in ElemBio Cloud.

Cards on the Workflow Library page display high-level information about each Analysis Workflow. Workflows that are for sequencing data have a blue/teal header and workflows that are for cytoprofiling data have a purple/pink header.

Analysis flows can be set up in ElemBio Cloud, to configure these workflows to automatically or manually initiate analysis when a run or other analysis completes.

Basic assignment workflows

ElemBio Cloud supports the following verified workflows that help with initial file conversion and assignment. In ElemBio Cloud, this type of workflow is represented by a purple tag for simple reference. Learn more about each workflow in the corresponding Analysis Workflows section.

Bases2Fastq

Uses Bases2Fastq to demultiplex sequencing run data to generate FASTQs and a QC report.

Cells2Stats

Uses Cells2Stats to generate cell statistics from cytoprofiling run data and prepares run output for CytoCanvas visualization.

Assignment

Cytoprofiling

Teton

Secondary analysis for sequencing workflows

ElemBio Cloud supports a growing list of workflows that perform secondary analysis after assignment workflows are completed. In ElemBio Cloud, this type of workflow is represented by a pink tag for simple reference. Learn more about each workflow in the corresponding Analysis Workflows section.

Sentieon Germline DNA WGS

Performs alignment using BWA-mem and variant calling using Sentieon DNAscope. Parameters are pre-set for WGS.

Sentieon Germline DNA Enrichment

Performs alignment using BWA-mem and variant calling using Sentieon DNAscope. Parameters are pre-set for WGS. Parameters are pre-set for enrichment input, including hosted bed files.

Secondary Analysis

Enrichment Panel

Human