Documentation Change History
November 20, 2023
Documentation_v1.8.0
Elembio Cloud
- Added table of cycle options to Run Planning.
Bases2Fastq
- Added guidance for creating HTML QC Reports for Individually Addressable Lanes.
- Added Bases2Fastq 1.6.0 Release Notes.
- Updated Adapter Trimming information for individually addressable lanes.
Run Manifest
- Added Cloudbreak chemistry index sequences for LoopSeq for AVITI.
- Updated Adapter Trimming Settings for use of the plus sign as a delimiter.
November 13, 2023
Documentation_v1.7.0
Elembio Cloud
- Added Low-Diversity Amplicon Library option to Add a Planned Run.
- Added Elembio Cloud 1.5.0 Release Notes.
- Reorganized administrator tasks in Managing Team Members, features in Add-Ons, content in Active Runs, and requirements for GCS Storage Connections.
October 26, 2023
Documentation_v1.6.0
Elembio Cloud
- Added top unassigned sequences to description of Indexing Assignment chart in Run Details.
- Added language to Run Details to clarify when Elembio Cloud displays specific charts.
- Added Elembio Cloud 1.4.0 Release Notes.
September 25, 2023
Documentation_v1.5.0
Run Manifest
- Added PhiX Control Library, Adept index sequences for Cloudbreak chemistry.
- Added individually addressable lanes add-on guidance for the Lanes column to Columns and a relevant example to Example Sample Usage.
- Added the Adept Cloudbreak Workflow Run Manifest Template for AVITI OS v2.x to the Template Manifests table.
September 21, 2023
Documentation_v1.4.0
Elembio Cloud
- Added pages for Run Planning and Add-On Features.
- Added Storage Location Data Upload to Storage Connections page.
- Updated Run Details and Run Field Descriptions for changes in AVITI OS 2.3.0, including new Library Pools field and run planning fields.
- Updated the Active Runs figure for changes to text on active runs cards.
- Updated introduction for Getting Started for new features and diagram of Elembio Cloud workflow process.
- Updated Inviting Team Members to clarify password prompt for new users and define rules for invitations.
- Revised introduction for Storage Connections for clarity of storage connection processes.
- Reorganized online help navigation menu and updated Platform Navigation to reflect Elembio Cloud navigation menu.
- Added Elembio Cloud 1.3.0 Release Notes.
Run Manifest
- Corrected minor typo in Base Mask Settings for the I2Mask default value for Elevate Cloudbreak.
September 6, 2023
Documentation_v1.3.0
Elembio Cloud
Bases2Fastq
August 14, 2023
Documentation_v1.2.0
Elembio Cloud
- Added a command prompt to the IAM role creation for setting a 12 hour maximum duration in the AWS CLI.
- Updated IAM role creation for limits on maximum session duration in the AWS Console UI and external ID characters.
- Updated the Release Notes and Change Log to only include Elembio Cloud Release Notes page.
- Moved Change Log content to Documentation Change History.
Bases2Fastq
- Added project-level file descriptions, metrics, and folder structure to Inputs and Outputs and Output Files.
- Added
--filter-maskand--no-projectsarguments to Optional Arguments. - Added Adapter Trimming information to Introduction.
- Added pip3 upgrade information to note in static binary installation instructions
- Added table of time estimates to Memory and Performance.
- Updated Python installation commands in static binary install instructions for accuracy and the Bokeh minor version number.
- Updated Bases file name and quantity in Input Files for change in AVITI OS 2.0.0+.
- Updated Bases2Fastq execution instructions for improved organization and clarity.
- Created Bases2Fastq Release Notes.
Run Manifest
- Added Project column to Columns and Create an Original File.
- Added examples to Base Masks Examples.
- Reorganized Settings page to improve clarity.
July 13, 2023
Documentation_v1.1.0
Elembio Cloud
- Added descriptions of charts and metrics for AVITI OS 2.2.0 to Run Details and Run Field Descriptions.
- Updated descriptions of Q-scores to include confidence rate in Primary Analysis Charts.
- Removed the cycle start information for metrics to direct users to the AVITI OS interface instead.
- Created Elembio Cloud Release Notes page.
June 16, 2023
Documentation_v1.0.0
Initial release of Elembio Cloud and the documentation website. Features at launch include the following components:
- Remote run monitoring
- Cloud storage connections
- Team member management