OPS run monitoring metrics

Review the metrics the AVITI24™ System reports while an OPS run is in progress.

The AVITI24 System reports the following metrics for OPS runs:

Metric	Description	Included when
Thumbnail	Flow-cell snapshot per well.	Always
OPS Target Assignment	Percent of reads assigned to a target site, per well.	Always
OPS vs. Controls	Target-vs-control comparison across wells.	Always
Q-Scores	Per-cycle base quality scores.	Always
Base Composition	Per-cycle base composition.	Always
Protein IF	Immunofluorescence signal per protein target.	Protein detection added

Run analysis overview

The Analysis Overview on the Run Details page summarizes run progress and key primary analysis metrics in real time as each well is processed.

The gauge color reflects run status: blue (priming or running), orange (pausing or paused, resumes automatically), green (completed), red (failed), and teal (stopped by a user). For the full status reference, see Remote run monitoring.

Metric examples

Thumbnail

A per-well flow-cell snapshot. Use it to confirm seeding, cell membrane, and nuclear cell paint quality.

OPS Target Assignment

Percent of reads assigned per TargetSiteName or labelled condition, selectable via dropdown.

OPS vs. Controls

Target-versus-control comparison of assigned counts per target and well.

Q-Scores

Base quality scores per cycle. Scores can be viewed per batch when multiple batches are present.

Base Composition

Base composition per cycle, shown by batch. Select a base to visualize its composition individually.

Protein IF

Immunofluorescence signal for each protein target in the panel. Select a protein target from the dropdown to generate its per-well plot. Included when protein detection is added.

To monitor a run in progress from ElemBio Cloud, see Remote run monitoring.